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Bacterial pneumonia (organism specified)

DOID EFO MESH SNOMED PheWeb

PNEUMOBACTKNOWN

streptococcal pneumonia: A febrile disease caused by streptococcus pneumoniae.

Endpoint definition

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FinnGen phenotype data

356077 individuals

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Apply sex-specific rule None

356077

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Check conditions None

356077

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Filter registries

Hospital Discharge: ICD-10 J13, J14, J15, J16, J17*
Hospital discharge: ICD-9 48[1-3]
Hospital discharge: ICD-8 48199|482
Cause of death: ICD-10 J13, J14, J15, J16, J17*
Cause of death: ICD-9 48[1-3]
Cause of death: ICD-8 48199|482

15841

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Check pre-conditions, main-only, mode, ICD version

Look only at ICD versions H.D: 10, 8, 9 ; C.O.D: 10, 8, 9

15729

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Check minimum number of events None

15729

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Include endpoints None

15729

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PNEUMOBACTKNOWN

Extra metadata

First used in FinnGen datafreeze DF2

Similar endpoints

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List of similar endpoints to Bacterial pneumonia (organism specified) based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Broader endpoints:

Venn diagram with a set fully inside an highlighted set Narrower endpoints:

Show all endpoint correlations

Summary Statistics

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Key figures

All Female Male
Number of individuals 15729 6389 9340
Unadjusted prevalence (%) 4.42 3.22 5.93
Mean age at first event (years) 57.99 52.31 61.88

Mortality

Follow-up Absolute risk HR [95% CI] p N
1998–2019 0.11 6.47 [5.51, 7.59] <1e-100 5162
15 years 0.02 2.39 [2.11, 2.71] 1.2e-42 1305
5 years 0.01 5.78 [5.22, 6.39] <1e-100 1442
1 year 0.01 32.53 [29.31, 36.10] <1e-100 2172

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: PNEUMOBACTKNOWN – Bacterial pneumonia (organism specified)
GWS hits:

Survival analyses between endpoints

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Plot

before Bacterial pneumonia (organism specified)
after Bacterial pneumonia (organism specified)

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Drugs most likely to be purchased after Bacterial pneumonia (organism specified)

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